Ancestry analysis on PLCO data

Analysis of ancestrality on PLCO data, discovering the distribution of each population in the samples.

This web application presents inferred ancestry labels and populations according to several sizes of principal component (Ks) to explain genetic diversity in the cohort. The models were trained using 1kGenomes, SGPC, HDPC, to infer ancestry populations in PLCO cohort.
Choose the K referred to the number of populations in consideration:

Ancestry PLCO ^DCEG
[code] [issues] [Notebook] [YouTube] [gitter]

Analysis of ancestrality on PLCO data, discovering the distribution of each population in the samples.

Distribution of a certain principal component in the countries:

Reference panel:

PLCO inferred populations:

Ancestry PLCO DCEG [code] [issues] [Notebook] [YouTube] [gitter]

Analysis of ancestrality on PLCO data, discovering the distribution of each population in the samples.

Distribution of a certain principal component in the countries:

Reference panel:

PLCO inferred populations:

Ancestry PLCO ^DCEG
[code] [issues] [Notebook] [YouTube] [gitter]